From 91b44c77404a37aa1b67ffb71d89f6493440cac2 Mon Sep 17 00:00:00 2001
From: Hernando Martinez Vergara <hernando.martinez@embl.de>
Date: Sun, 15 Sep 2019 13:44:20 +0200
Subject: [PATCH] Update README.md

---
 README.md | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index fb0032f..c368f3b 100755
--- a/README.md
+++ b/README.md
@@ -122,11 +122,16 @@ In addition to the data, the scripts for generating registration and producing d
 ### Registration
 
 The folder `registration` contains:
-A folder called transfer_ProSPr_data. This folder contains the scripts needed to copy and process the ProSPr output to 
+- `transfer_ProSPr_data`. This folder contains the scripts needed to copy and process the ProSPr output to 
 '/g/arendt/EM_6dpf_segmentation/platy-browser-data/data/rawdata/prospr'.
 It reads the .tif files that will be registered to the EM (e.g. MEDs, tissue manual segmentations, reference),
 mirrors them in x axis, adds size information (0.55um/px), and deals with gene names.
-run it in the cluster: sbatch ./ProSPr_copy_and_mirror.sh
+run it in the cluster:
+```
+sbatch ./ProSPr_copy_and_mirror.sh
+```
+
+- `ProSPr_files_for_registration`. The three files to guide the transformation of prospr space into the EM.
 
 ### Segmentation
 
-- 
GitLab