diff --git a/data/test_n5/0.6.5/images/s3-n5/sbem-6dpf-1-whole-raw.xml b/data/test_n5/0.6.5/images/s3-n5/sbem-6dpf-1-whole-raw.xml index e6de17c7521dcfbf237c9ede16cb96363488b198..067972613350abd8ecd435b9f60709d212fcff98 100644 --- a/data/test_n5/0.6.5/images/s3-n5/sbem-6dpf-1-whole-raw.xml +++ b/data/test_n5/0.6.5/images/s3-n5/sbem-6dpf-1-whole-raw.xml @@ -11,7 +11,7 @@ <ViewSetup> <id>0</id> <name>channel 1</name> - <size>430 405 357</size> + <size>3438 3240 2854</size> <voxelSize> <unit>micrometer</unit> <size>0.08 0.08 0.1</size> diff --git a/data/test_n5/0.6.5/segmentations/s3-n5/sbem-6dpf-1-whole-segmented-cells-labels.xml b/data/test_n5/0.6.5/segmentations/s3-n5/sbem-6dpf-1-whole-segmented-cells-labels.xml index 5356bed51494cd58cc1e21a435691986b8fcb1e4..78dd8ad2cb0be40cf520a9ec7dcf85e75d51fc05 100644 --- a/data/test_n5/0.6.5/segmentations/s3-n5/sbem-6dpf-1-whole-segmented-cells-labels.xml +++ b/data/test_n5/0.6.5/segmentations/s3-n5/sbem-6dpf-1-whole-segmented-cells-labels.xml @@ -11,7 +11,7 @@ <ViewSetup> <id>0</id> <name>channel 1</name> - <size>860 810 714</size> + <size>3438 3240 2854</size> <voxelSize> <unit>micrometer</unit> <size>0.08 0.08 0.1</size> diff --git a/scripts/files/for_upload.py b/scripts/files/for_upload.py index 8cb055b1e2b251c1ec0c98dd664ad9ce30c11348..894e6fdc061070f928de8d964e661e51b4ef5574 100644 --- a/scripts/files/for_upload.py +++ b/scripts/files/for_upload.py @@ -165,7 +165,7 @@ def copy_images(in_folder, out_folder, data_out_folder, # copy from hdf5 to n5 copy_file_to_bdv_n5(in_h5, out_file, resolution, chunks, start_scale) - key = get_key(False, 0, 0, start_scale) + key = get_key(False, 0, 0, 0) with open_file(out_file, 'r') as f: shape = f[key].shape @@ -216,7 +216,7 @@ def copy_segmentations(in_folder, out_folder, segmentations_to_copy, output_root # copy from hdf5 to n5 copy_file_to_bdv_n5(in_h5, out_file, resolution, chunks, start_scale) - key = get_key(False, 0, 0, start_scale) + key = get_key(False, 0, 0, 0) with open_file(out_file, 'r') as f: shape = f[key].shape