From c6a7a0eb3a5c4f3100280cbc29a36892db3363b7 Mon Sep 17 00:00:00 2001
From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de>
Date: Thu, 6 Feb 2020 13:17:15 +0100
Subject: [PATCH] Move nephridia segmentation file to rawdata
---
.../sbem-6dpf-1-whole-segmented-nephridia.xml | 2 +-
.../sbem-6dpf-1-whole-segmented-nephridia.xml | 39 +++++++++++++++++++
2 files changed, 40 insertions(+), 1 deletion(-)
create mode 100644 data/rawdata/sbem-6dpf-1-whole-segmented-nephridia.xml
diff --git a/data/0.6.5/segmentations/sbem-6dpf-1-whole-segmented-nephridia.xml b/data/0.6.5/segmentations/sbem-6dpf-1-whole-segmented-nephridia.xml
index bd3ca05..ba8625a 100644
--- a/data/0.6.5/segmentations/sbem-6dpf-1-whole-segmented-nephridia.xml
+++ b/data/0.6.5/segmentations/sbem-6dpf-1-whole-segmented-nephridia.xml
@@ -2,7 +2,7 @@
<BasePath type="relative">.</BasePath>
<SequenceDescription>
<ImageLoader format="bdv.hdf5">
- <hdf5 type="relative">sbem-6dpf-1-whole-segmented-nephridia.h5</hdf5>
+ <hdf5 type="relative">../../sbem-6dpf-1-whole-segmented-nephridia.h5</hdf5>
</ImageLoader>
<ViewSetups>
<Attributes name="channel">
diff --git a/data/rawdata/sbem-6dpf-1-whole-segmented-nephridia.xml b/data/rawdata/sbem-6dpf-1-whole-segmented-nephridia.xml
new file mode 100644
index 0000000..bd3ca05
--- /dev/null
+++ b/data/rawdata/sbem-6dpf-1-whole-segmented-nephridia.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">sbem-6dpf-1-whole-segmented-nephridia.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>0</id>
+ <name>0</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>Setup0</name>
+ <size>860 810 714</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.32 0.32 0.4</size>
+ </voxelSize>
+ <attributes>
+ <channel>0</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.32 0.0 0.0 0.0 0.0 0.32 0.0 0.0 0.0 0.0 0.4 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
--
GitLab