diff --git a/scripts/extension/attributes/morphology_impl.py b/scripts/extension/attributes/morphology_impl.py index 58e86e4823ab8c8b81705d591e5ec5a2c3c6cc46..da9cf6a1aa3406d5da8d84f2ae7b244201438d74 100644 --- a/scripts/extension/attributes/morphology_impl.py +++ b/scripts/extension/attributes/morphology_impl.py @@ -481,7 +481,7 @@ def morphology_impl_nucleus(nucleus_segmentation_path, raw_path, chromatin_path, # convert to pandas table and add column names stats = pd.DataFrame(stats) - stats.columns = generate_column_names(raw_path, chromatin_path) + stats.columns = generate_column_names(raw_path, chromatin_path, None) return stats @@ -584,7 +584,7 @@ def morphology_impl_cell(cell_segmentation_path, raw_path, # convert to pandas table and add column names stats = pd.DataFrame(stats) - stats.columns = generate_column_names(raw_path, None) + stats.columns = generate_column_names(raw_path, None, nucleus_segmentation_path) return stats