Commit f8b3d998 authored by Sergio Heli Triana's avatar Sergio Heli Triana

app files

parent 9044e502
......@@ -2,10 +2,14 @@ FROM rocker/shiny:3.6.1
RUN apt-get update && apt-get install -y libtiff-dev \
libjpeg-dev libfftw3-dev libhdf5-dev libssl-dev \
libxml2-dev libgmp3-dev
&& rm -rf /var/lib/apt/lists/*
libxml2-dev libgmp3-dev
ADD etc/ /etc/shiny-server/
COPY ./packages.R packages.R
COPY global.R /srv/shiny-server/
COPY server.R /srv/shiny-server/
COPY ui.r /srv/shiny-server/
RUN Rscript packages.R
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Sending build context to Docker daemon 7.168kB
Error response from daemon: Dockerfile parse error line 6: unknown instruction: &&
......@@ -2,8 +2,8 @@ install.packages("BIOMOD", repos="http://R-Forge.R-project.org")
install.packages("mclust")
install.packages("devtools")
library(devtools)
devtools::install_github("thomasp85/patchwork")
devtools::install_github(repo = "ebecht/hypergate")
devtools::install_github(repo = 'satijalab/seurat', ref = 'develop')
install.packages("plotly")
install.packages("shinycustomloader")
install.packages("rpart")
......@@ -21,6 +21,7 @@ install.packages("ggrepel")
install.packages("RColorBrewer")
install.packages("dplyr")
install.packages("aws.s3", repos = "https://cloud.R-project.org")
devtools::install_github(repo = 'satijalab/seurat', ref = 'develop')
install.packages(c("sp", "polyclip"))
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
......
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