From 063a74574f298830a926d366ab88dd0884788521 Mon Sep 17 00:00:00 2001
From: Tobias Marschall <tobias.marschall@0ohm.net>
Date: Thu, 26 Jul 2018 10:06:48 +0200
Subject: [PATCH] Re-order chromosomes
---
Snake.config.json | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Snake.config.json b/Snake.config.json
index ba5b671..a1f9351 100644
--- a/Snake.config.json
+++ b/Snake.config.json
@@ -1,5 +1,5 @@
{
- "chromosomes" : ["chrX","chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22"],
+ "chromosomes" : ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22","chrX"],
"reference" : "/g/korbel/shared/datasets/refgenomes/human/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna",
"mosaicatcher" : "/g/korbel/meiers/tools/mosaicatcher/mosaicatcher_experimental/build/mosaicatcher",
--
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