From 1b1978a5532614e04d9380b5339c35c3d9aeb84b Mon Sep 17 00:00:00 2001 From: Thomas Weber <thomas.weber@embl.de> Date: Tue, 17 May 2022 16:28:22 +0200 Subject: [PATCH] Update README.md --- README.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index f4b4dc0..d45f1fc 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,7 @@ Minimum system requirements vary based on the use case. We highly recommend runn MosaiCatcher leverages snakemake built-in features such as execution within container and conda predefined modular environments. That's why it is only necessary to create an environment that relies on [snakemake](https://github.com/snakemake/snakemake) (to execute the pipeline) and [pandas](https://github.com/pandas-dev/pandas) (to handle basic configuration). If you plan to generate HTML Web report including plots, it is also necessary to install [imagemagick](https://github.com/ImageMagick/ImageMagick). -If possible, it is also highly recommanded to install and use mamba package manager instead of conda, which is much more efficient. +If possible, it is also highly recommended to install and use mamba package manager instead of conda, which is much more efficient. ``` conda install -c conda-forge mamba @@ -107,10 +107,10 @@ The `--config` argument will here overrides value of each of the keys present in Following commands allow to retrieve 1000G VCF file (+ .tbi index) as well as Fasta reference genome file (+ .fai index). ``` -wget https://sandbox.zenodo.org/record/1060653/files/ALL.chr1-22plusX_GRCh38_sites.20170504.renamedCHR.vcf.gz -wget https://sandbox.zenodo.org/record/1060653/files/ALL.chr1-22plusX_GRCh38_sites.20170504.renamedCHR.vcf.gz.tbi -wget https://sandbox.zenodo.org/record/1060653/files/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna -wget https://sandbox.zenodo.org/record/1060653/files/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.fai +wget https://sandbox.zenodo.org/record/1062182/files/ALL.chr1-22plusX_GRCh38_sites.20170504.renamedCHR.vcf.gz +wget https://sandbox.zenodo.org/record/1062182/files/ALL.chr1-22plusX_GRCh38_sites.20170504.renamedCHR.vcf.gz.tbi +wget https://sandbox.zenodo.org/record/1062182/files/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna +wget https://sandbox.zenodo.org/record/1062182/files/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.fai ``` -- GitLab