diff --git a/Snakefile b/Snakefile index 66971ba015b2112adabed6ace9b3cb13a93ee23e..da487a083d397723c2928ea8cd4d6eb4df3fb419 100644 --- a/Snakefile +++ b/Snakefile @@ -290,10 +290,10 @@ rule prepare_strandphaser_config_per_chrom: def locate_snv_vcf(wildcards): - if config["snv_calls"] == "": - return "snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom) - else: - return "external_snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom) + if config["snv_calls"] == "": + return "snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom) + else: + return "external_snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom) rule run_strandphaser_per_chrom: input: