diff --git a/Snakefile b/Snakefile index a3f4ad709862d3be2c7d1094553b73c6d9004314..6962d0e88c99256ba4878ab0a1157d60d73b2bee 100644 --- a/Snakefile +++ b/Snakefile @@ -701,7 +701,7 @@ rule postprocessing_sv_group_table: input: calls = "postprocessing/merge/{sample}/{window}_fixed_norm.{bpdens}/simpleCalls_llr{llr}_poppriors{pop_priors}_haplotags{use_haplotags}_gtcutoff{gtcutoff}_regfactor{regfactor}.txt" output: - grouptrack = "postprocessing/group-table/{sample}/{window}_fixed_norm.{bpdens,selected_j[0-9\\.]+_s[0-9\\.]+}/simpleCalls_llr{llr}_poppriors{pop_priors,(TRUE|FALSE)}_haplotags{use_haplotags,(TRUE|FALSE)}_gtcutoff{gtcutoff,[0-9\\.]+}_regfactor{regfactor,[0-9]+}.tsv" + grouptrack = "postprocessing/group-table/{sample}/{window}_fixed_norm.{bpdens,selected_j[0-9\\.]+_s[0-9\\.]+_scedist[0-9]+}/simpleCalls_llr{llr}_poppriors{pop_priors,(TRUE|FALSE)}_haplotags{use_haplotags,(TRUE|FALSE)}_gtcutoff{gtcutoff,[0-9\\.]+}_regfactor{regfactor,[0-9]+}.tsv" shell: 'utils/create-sv-group-track.py {input.calls} > {output.grouptrack}'