From 306798a838ba73bcfaea5a8621570efc099b12c3 Mon Sep 17 00:00:00 2001
From: Sascha Meiers <meiers@embl.de>
Date: Sat, 27 Oct 2018 17:55:05 +0200
Subject: [PATCH] fixed missing wildcards in 'grouptrack'x
---
Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Snakefile b/Snakefile
index a3f4ad7..6962d0e 100644
--- a/Snakefile
+++ b/Snakefile
@@ -701,7 +701,7 @@ rule postprocessing_sv_group_table:
input:
calls = "postprocessing/merge/{sample}/{window}_fixed_norm.{bpdens}/simpleCalls_llr{llr}_poppriors{pop_priors}_haplotags{use_haplotags}_gtcutoff{gtcutoff}_regfactor{regfactor}.txt"
output:
- grouptrack = "postprocessing/group-table/{sample}/{window}_fixed_norm.{bpdens,selected_j[0-9\\.]+_s[0-9\\.]+}/simpleCalls_llr{llr}_poppriors{pop_priors,(TRUE|FALSE)}_haplotags{use_haplotags,(TRUE|FALSE)}_gtcutoff{gtcutoff,[0-9\\.]+}_regfactor{regfactor,[0-9]+}.tsv"
+ grouptrack = "postprocessing/group-table/{sample}/{window}_fixed_norm.{bpdens,selected_j[0-9\\.]+_s[0-9\\.]+_scedist[0-9]+}/simpleCalls_llr{llr}_poppriors{pop_priors,(TRUE|FALSE)}_haplotags{use_haplotags,(TRUE|FALSE)}_gtcutoff{gtcutoff,[0-9\\.]+}_regfactor{regfactor,[0-9]+}.tsv"
shell:
'utils/create-sv-group-track.py {input.calls} > {output.grouptrack}'
--
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