diff --git a/Snakefile b/Snakefile index 338dd312af8f3a0f7412b961605b4fb29043e304..325e316ca8a389a88bfb75a45095691f7e7b0daa 100644 --- a/Snakefile +++ b/Snakefile @@ -100,6 +100,12 @@ rule all: bpdens = BPDENS, method = METHODS, plottype = ["byaf","bypos"]), + expand("sv_calls/{sample}/{window}_fixed_norm.{bpdens}/plots/sv_clustering/{method}-{plottype}.pdf", + sample = SAMPLES, + window = [100000], + bpdens = BPDENS, + method = METHODS, + plottype = ["position","chromosome"]), expand("halo/{sample}/{window}_{suffix}.json.gz", sample = SAMPLES, window = [100000],