From 343075d5c524cf4f7d728499713dfe873287e05f Mon Sep 17 00:00:00 2001
From: Tobias Marschall <tobias.marschall@0ohm.net>
Date: Thu, 11 Oct 2018 09:09:36 +0200
Subject: [PATCH] Generate clustering plots for all samples/methods
---
Snakefile | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/Snakefile b/Snakefile
index 338dd31..325e316 100644
--- a/Snakefile
+++ b/Snakefile
@@ -100,6 +100,12 @@ rule all:
bpdens = BPDENS,
method = METHODS,
plottype = ["byaf","bypos"]),
+ expand("sv_calls/{sample}/{window}_fixed_norm.{bpdens}/plots/sv_clustering/{method}-{plottype}.pdf",
+ sample = SAMPLES,
+ window = [100000],
+ bpdens = BPDENS,
+ method = METHODS,
+ plottype = ["position","chromosome"]),
expand("halo/{sample}/{window}_{suffix}.json.gz",
sample = SAMPLES,
window = [100000],
--
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