diff --git a/Snakefile b/Snakefile index 4430c12db45223b98f5acec0bfeb5bbb0091cd23..99484d73afb747222de82ad557cd8ebaaf198c1c 100644 --- a/Snakefile +++ b/Snakefile @@ -375,6 +375,20 @@ rule run_sv_classification: maximumCN=4 \ utils/R-packages2/ > {log} 2>&1 """ + +rule convert_SVprob_output: + input: + haplotypeProbs = "sv_probabilities/{sample}/{windows}.{bpdens}/allSegCellProbs.table", + genotypeProbs = "sv_probabilities/{sample}/{windows}.{bpdens}/allSegCellGTprobs.table", + info = "counts/{sample}/{windows}.info", + bamNames = "sv_probabilities/{sample}/{windows}.{bpdens}/bamNames.txt" + output: + "sv_probabilities/{sample}/{windows}.{bpdens}/final_plots/" + log: + "log/{sample}/final.plots.{windows}.{bpdens}.txt" + script: + "utils/plot_heatmap.R" + rule convert_SVprob_output: input: probs = "sv_probabilities/{sample}/{windows}.{bpdens}/allSegCellProbs.table",