From 72bdaf446d9b4365ecd669bc1cfc73cae79f5cd6 Mon Sep 17 00:00:00 2001
From: Tobias Marschall <tobias.marschall@0ohm.net>
Date: Thu, 1 Nov 2018 12:17:41 +0100
Subject: [PATCH] Fix rule postprocessing_sv_group_table after adding
"_scedist" to segmentation parameters
---
Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Snakefile b/Snakefile
index 8b6e3d6..49681bc 100644
--- a/Snakefile
+++ b/Snakefile
@@ -701,7 +701,7 @@ rule postprocessing_sv_group_table:
input:
calls = "postprocessing/merge/{sample}/{window}_fixed_norm.{bpdens}/simpleCalls_llr{llr}_poppriors{pop_priors}_haplotags{use_haplotags}_gtcutoff{gtcutoff}_regfactor{regfactor}.txt"
output:
- grouptrack = "postprocessing/group-table/{sample}/{window}_fixed_norm.{bpdens,selected_j[0-9\\.]+_s[0-9\\.]+}/simpleCalls_llr{llr}_poppriors{pop_priors,(TRUE|FALSE)}_haplotags{use_haplotags,(TRUE|FALSE)}_gtcutoff{gtcutoff,[0-9\\.]+}_regfactor{regfactor,[0-9]+}.tsv"
+ grouptrack = "postprocessing/group-table/{sample}/{window}_fixed_norm.{bpdens,selected_j[0-9\\.]+_s[0-9\\.]+_scedist[0-9\\.]+}/simpleCalls_llr{llr}_poppriors{pop_priors,(TRUE|FALSE)}_haplotags{use_haplotags,(TRUE|FALSE)}_gtcutoff{gtcutoff,[0-9\\.]+}_regfactor{regfactor,[0-9]+}.tsv"
shell:
'utils/create-sv-group-track.py {input.calls} > {output.grouptrack}'
--
GitLab