From 7947b78757215dd975f2a44d0fadcc4bb1e6b25e Mon Sep 17 00:00:00 2001
From: Tobias Marschall <tobias.marschall@0ohm.net>
Date: Wed, 10 Jan 2018 18:17:38 +0100
Subject: [PATCH] Mention BSgenome.Hsapiens.UCSC.hg38
---
README.md | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/README.md b/README.md
index 9c257ef..73a2edb 100644
--- a/README.md
+++ b/README.md
@@ -10,7 +10,12 @@ Preliminary SV calling using Strand-seq data - summarized in a [Snakemake](https
* Install [mosaicatcher](https://github.com/friendsofstrandseq/mosaicatcher) (*currently you will need the `develop` branch*)
* Get the R-scripts from [strandsequtils](https://github.com/friendsofstrandseq/strandsequtils)
- * Install [Strand-Phaser](https://github.com/daewoooo/StrandPhaseR)
+ * Install BSgenome.Hsapiens.UCSC.hg38:
+ ```
+ source("https://bioconductor.org/biocLite.R")
+ biocLite('BSgenome.Hsapiens.UCSC.hg38')
+ ```
+ * [Strand-Phaser](https://github.com/daewoooo/StrandPhaseR) is installed automagically
2. **Set up the configuration of the smakemake pipeline**
--
GitLab