diff --git a/Snake.config.json b/Snake.config.json index 04054ebadbf7333c5bad241bafa20be0801e63af..cb6269f2d23a42e1cd69dcdc2debc0ce24171232 100644 --- a/Snake.config.json +++ b/Snake.config.json @@ -1,5 +1,4 @@ { - "sample" : "D2Rfb", "chromosomes" : ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22"], "reference" : "/g/korbel/shared/datasets/refgenomes/human/hg19_chr1_22XYM.fa", @@ -10,7 +9,7 @@ "samtools" : "samtools", "bcftools" : "bcftools", - "snv_calls" : "", + "snv_calls" : {}, "exclude_file" : "/g/korbel/meiers/tools/mosaicatcher/mosaicatcher/data/exclude/hg19.exclude", "variable_bins" : {