diff --git a/Snake.config.json b/Snake.config.json index e969b73cbc256e5608e74d2ec74861bff7e9cb99..930151e33cc150c0bbb9cb53fb33a8f263ca6fe5 100644 --- a/Snake.config.json +++ b/Snake.config.json @@ -9,7 +9,11 @@ "samtools" : "samtools", "bcftools" : "bcftools", - "snv_calls" : {}, + "snv_calls" : { + "C7_data" : "/g/korbel2/StrandSeq/20180221_RPE_Data/regenSNVs_GRCh38sites_C7_chr1-22plusX.filtered.vcf.gz", + "RPE-BM510" : "/g/korbel2/StrandSeq/20180221_RPE_Data/regenSNVs_GRCh38sites_BM510_chr1-22plusX.filtered.vcf.gz", + "RPE1-WT" : "/g/korbel2/StrandSeq/20180606_RPE1-WT/regenSNVs_GRCh38sites_RPEWTstrandS_chr1-22plusX.filtered.vcf.gz" + }, "variable_bins" : { "50000" : "utils/variable_bins.GRCh38.50kb.bed",