Commit ed3259fa authored by Vallo Varik's avatar Vallo Varik
Browse files

Task 4, switch to input data output plot scheme

It will help you motivate next step
parent 6ddbc361
......@@ -64,11 +64,6 @@ possible.
just say that you need to subtract background on each day, on each plate,
in each timepoint. The wells with no bacteria were encoded to have `uM =
-1` i.e. after appropriate grouping it comes down to: `OD = OD/OD[uM ==
-1]`. Input [data](doc/tasks/03_dat.csv) is the same as in step 3 above.
And output should look like shown below (first six rows and only subset of columns shown).
```{r}
read_csv('doc/tasks/04_out.csv') %>%
select(Date:Well, Time_h, RawOD, uM, OD)
```
-1]`. Input [data](doc/tasks/03_dat.csv) (the same as in step 3 above).
And if you now plot everything exactly as in step 3 above, except having OD on y-axis, here's what [output](doc/tasks/04_out.pdf) should look like.
......@@ -49,18 +49,7 @@ to use the former whenever possible.
on each day, on each plate, in each timepoint. The wells with no
bacteria were encoded to have `uM = -1` i.e. after appropriate
grouping it comes down to: `OD = OD/OD[uM == -1]`. Input
[data](doc/tasks/03_dat.csv) is the same as in step 3 above. And
output should look like shown below (first six rows and only subset
of columns shown).
<!-- -->
## # A tibble: 6 × 7
## Date Plt Well Time_h RawOD uM OD
## <date> <dbl> <chr> <dbl> <dbl> <dbl> <dbl>
## 1 2022-05-04 4 M1 0 0.217 100 0.03
## 2 2022-05-04 4 M1 1.08 0.233 100 0.04
## 3 2022-05-04 4 M1 2.16 0.213 100 0.018
## 4 2022-05-04 4 M1 3.24 0.213 100 0.021
## 5 2022-05-04 4 M1 4.32 0.212 100 0.022
## 6 2022-05-04 4 M1 5.41 0.211 100 0.022
[data](doc/tasks/03_dat.csv) (the same as in step 3 above). And if
you now plot everything exactly as in step 3 above, except having OD
on y-axis, here’s what [output](doc/tasks/04_out.pdf) should look
like.
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