#'@param ... For explanation of all further parameters, see \code{\link{RNAMagnetBase}}.
#'@return Returns an objects of class \code{\link{rnamagnet}}. \code{\link{PlotSignalingNetwork}} or \code{\link{getRNAMagnetGenes}} can be used for further analyses.
#'@param .k Fuzzification parameter, see detail. Recommended to leave at the default value.
#'@param .x0 Fuzzification parameter, see detail. Recommended to leave at the default value.
#'@param .minExpression Minimal expression level of genes to be included, specified as the number of cells in the dataset that express the gene.
#'@param .minMolecules Number of molecules per cell required to count the cells as positive.
#'@param .version The version of the underlying ligand-receptor database. See \code{\link{getLigandsReceptors}}.
#'@param .cellularCompartment Types of ligands to be included. For physical interactions, defaults to \code{ c("Membrane","ECM","Both")}. See \code{\link{getLigandsReceptors}}.
#'@param .manualAnnotation Annotation status of ligands to be included. Default to \code{"Correct"}. See \code{\link{getLigandsReceptors}}.