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Update Home authored by Arina Rybina's avatar Arina Rybina
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...@@ -23,11 +23,12 @@ QC - Quality Check ...@@ -23,11 +23,12 @@ QC - Quality Check
- FCSpipelineEMBL_KNIME is a software designed for automated processing: using default settings and data structure only user inputs and visualization of data steps (see green frames) need the user's supervision. In addition, the workflow allows for interactive inspection of results and offers the access and modify the source code of individual KNIME analysis nodes in Python or Java, with a flexibility to add additional processing nodes. - FCSpipelineEMBL_KNIME is a software designed for automated processing: using default settings and data structure only user inputs and visualization of data steps (see green frames) need the user's supervision. In addition, the workflow allows for interactive inspection of results and offers the access and modify the source code of individual KNIME analysis nodes in Python or Java, with a flexibility to add additional processing nodes.
- Before opening KNIME, we recommend to open Anaconda Navigator and check the environment by going to "environments" and choosing: py36_knime. - Before opening KNIME, we recommend to open Anaconda Navigator and check the environment by going to "environments" and choosing: py36_knime. Alternatively, one can check the environment using the Anaconda command line.
Alternatively, one can check the environment using the Anaconda command line.
![CaptureAnaconda](uploads/d609941d1e690c1dc9bb550a0aed818f/CaptureAnaconda.PNG) ![CaptureAnaconda](uploads/d609941d1e690c1dc9bb550a0aed818f/CaptureAnaconda.PNG)
**OPEN KNIME** and in teh KNIME Explorer choose the FCSpipelineEMBL_KNIME worflow, which you have unzipped and placed into your local KNIME workflow directory.
![wf3](uploads/3e13219973e4aabd25390e25c2c0e788/wf3.png) ![wf3](uploads/3e13219973e4aabd25390e25c2c0e788/wf3.png)
- Comments and information on individual nodes are added in the KNIME description panel, which appears when clicking on the node once. - Comments and information on individual nodes are added in the KNIME description panel, which appears when clicking on the node once.
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