... | @@ -23,7 +23,10 @@ QC - Quality Check |
... | @@ -23,7 +23,10 @@ QC - Quality Check |
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- FCSpipelineEMBL_KNIME is a software designed for automated processing: using default settings and data structure only user inputs and visualization of data steps (see green frames) need the user's supervision. In addition, the workflow allows for interactive inspection of results and offers the access and modify the source code of individual KNIME analysis nodes in Python or Java, with a flexibility to add additional processing nodes.
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- FCSpipelineEMBL_KNIME is a software designed for automated processing: using default settings and data structure only user inputs and visualization of data steps (see green frames) need the user's supervision. In addition, the workflow allows for interactive inspection of results and offers the access and modify the source code of individual KNIME analysis nodes in Python or Java, with a flexibility to add additional processing nodes.
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- Before opening KNIME, we recommend to open Anaconda Navigator and check the environment by going to "environments" and choosing: **py36_knime**. Alternatively, one can check the environment using the Anaconda command line.
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- Before opening KNIME, we recommend to open Anaconda Navigator and check the environment by going to "environments" and choosing: py36_knime.
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Alternatively, one can check the environment using the Anaconda command line.
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![CaptureAnaconda](uploads/d609941d1e690c1dc9bb550a0aed818f/CaptureAnaconda.PNG)
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![wf3](uploads/3e13219973e4aabd25390e25c2c0e788/wf3.png)
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![wf3](uploads/3e13219973e4aabd25390e25c2c0e788/wf3.png)
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... | @@ -31,11 +34,11 @@ QC - Quality Check |
... | @@ -31,11 +34,11 @@ QC - Quality Check |
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- The input of the individual nodes can be typed in and modified by "**right click**" on the node and choosing "**Configure**". Alternatively, nodes can be opened by "double click" on the node.
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- The input of the individual nodes can be typed in and modified by "**right click**" on the node and choosing "**Configure**". Alternatively, nodes can be opened by "double click" on the node.
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- The source code in the individual nodes, also in the processing nodes, becomes visible by "**double clicking**" on the node. If needed, the scripts can be modified by the user in Python or Java.
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- The source code in the individual nodes, also in the processing nodes, becomes visible by "**double click**" on the node. If needed, the scripts can be modified by the user in Python or Java.
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- Most of the nodes are composed of several consecutive nodes and node branches, which open up once double clicking on the main node.
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- Most of the nodes are composed of several consecutive nodes and node branches, which open up, once double clicking on the main node.
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- To run a node, **right click **on the node and choose "**execute**". For the first run, we recommend the user to execute the workflow node by node, to make sure that each steps runs smoothly. Errors become visible by red light in the node, and /or by error messages in the KNIME console.
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- To run a node, **right click** on the node and choose "**execute**". For the first run, we recommend the user to execute the workflow node by node, to make sure that each steps runs smoothly. Errors become visible by red light in the node, and /or by error messages in the KNIME Console.
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#### I - WT processing block
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#### I - WT processing block
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