... | ... | @@ -7,9 +7,18 @@ Here we explain how to install and use Fluorescence Correlation Spectroscopy (FC |
|
|
#### 4. [Interactive Visualisation of Calibration Plot](#interactive-visualisation-of-calibration-plot)
|
|
|
#### 5. [Output files](#output-files)
|
|
|
#### Installation
|
|
|
1. Download the latest [KNIME Analytics Platform](https://www.knime.com/downloads). It is available for Windows, Linux, and Mac OS X.
|
|
|
> Take a look on [Getting Started](https://www.knime.com/knime) for a brief introduction into KNIME Analytics Platform.
|
|
|
2. Install the [KNIME Python Integration](https://docs.knime.com/2018-12/python_installation_guide/index.html) to be used with KNIME Analytics Platform.
|
|
|
1. Install [Anaconda](https://www.anaconda.com/distribution/) with Python3.
|
|
|
2. Download the latest [KNIME Analytics Platform](https://www.knime.com/downloads). It is available for Windows, Linux, and Mac OS X.
|
|
|
> Take a look on [Getting Started](https://www.knime.com/knime) for a brief introduction into KNIME Analytics Platform.
|
|
|
3. Install the [KNIME Python Integration](https://docs.knime.com/2018-12/python_installation_guide/index.html) to be used with KNIME Analytics Platform.
|
|
|
|
|
|
Follow this steps:
|
|
|
* Download a configuration file [fcspy.yml](https://git.embl.de/halavaty/fcs-pipelines-vitali-vistunou)
|
|
|
* Type in your terminal (for windows command prompt or anaconda prompt)
|
|
|
```
|
|
|
conda env create -f <PATH-TO-FOLDER-WITH-fcspy.yml>/fcspy.yml
|
|
|
```
|
|
|
conda env create -f <PATH-TO-FOLDER>/py36_knime.yml
|
|
|
3. Save and unzip [fcs_pipeline.zip](https://git.embl.de/halavaty/fcs-pipelines-vitali-vistunou) in knime-workspace directory that was created after KNIME installation. fcs_pipeline directory includes all files needed for fcs pipeline to work.
|
|
|
4. Install [Fluctuation Analyzer (FA) software](http://fluctuations.de/downloads.html) provided by Malte Wachsmuth.
|
|
|
#### Structure of workflow
|
... | ... | |