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Home · Changes

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Update Home authored Jun 06, 2017 by Antonio Politi's avatar Antonio Politi
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Home.md
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......@@ -198,13 +198,13 @@ where
Each well is saved in a separate directory
``` DE_WXXXX_PYYYY```
``` DE_WXXXX_PYYYY ```
If number of subpositions is > 1 then there is a subdirectory per subposition
```
```
DE_WXXXX
DE_WXXXX_PYYYY
DE_WXXXX_PYYYY
```
## [<img src="./images/up.PNG">](#back) <a name=startstop></a> Start and stop acquisition, save and load settings
......@@ -255,7 +255,7 @@ Contains the commands for the microscope
`setRoi` | Read ROIs and update ROIs for subsequent task(s) in pipeline
<a name="codeoia"></a>
####Key **CodeOia**
#### Key **CodeOia**
Contains commands for the image analysis program.
Value | Meaning
......@@ -264,7 +264,7 @@ Contains commands for the image analysis program.
`newImage` | A new image with path filePath needs to be analysed
<a name="filepath"></a>
####Key **filePath**
#### Key **filePath**
Contains full path of image that needs to be analysed
Value | Meaning
......@@ -274,7 +274,7 @@ Contains full path of image that needs to be analysed
<a name="xyz"></a>
####Keys **XYZ**
#### Keys **XYZ**
Specifies stage positions. Coordinates with respect to upper left corner of the image (in pixels) and first slice (0,0,0). Several points are separated by `;`
Value | Meaning
......@@ -283,7 +283,7 @@ Specifies stage positions. Coordinates with respect to upper left corner of the
`Y1;Y2;Y3;...` | Y positions with respect to upper corner in pixels
`Z1;Z2;Z3;...` | Z positions with respect to bottom slice in pixels. If this key is left empty current focus position is used.
####Keys **fcsX**, **fcsY**, **fcsZ**
#### Keys **fcsX**, **fcsY**, **fcsZ**
Specifies FCS scanner positions. Coordinates with respect to upper left corner of the image (in pixels) and first slice (0,0,0). Several points are separated by `;`
......@@ -296,7 +296,7 @@ Specifies FCS scanner positions. Coordinates with respect to upper left corner o
<a name="rois"></a>
####Keys **roiAim**, **roiType**, **roiX**, **roiY**
#### Keys **roiAim**, **roiType**, **roiX**, **roiY**
A ROI is defined by 4 different keys.
Value | Meaning
......
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