grp-gbcs

Genome Biology Computational Support (GBCS) All members of GBCS can be reached at gbcs@embl.de, please post requests to gbcs_request@embl.de

  • Je

    a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

    updated
  • galaxy_shift-read-pos-in-bam

    galaxy tool to shift read position in a BAM file. Pretty handy for ATAC-seq. The shell script can also be used directly. Resulting BAM is sorted.

    updated
  • snakemake-tutorial

    Snakemake biological workflow management tutorial

    updated