... | @@ -8,7 +8,7 @@ The IDE requires the following packages from CRAN: DT, shiny, shinyFiles, shinyc |
... | @@ -8,7 +8,7 @@ The IDE requires the following packages from CRAN: DT, shiny, shinyFiles, shinyc |
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From within an R console, install with:
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From within an R console, install with:
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```
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```
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> > install.packages("DT", "shiny", "shinyFiles", "shinycssloaders", "shinydashboard", "shinyjs", "shinyWidgets", "shinybusy", "assertthat", "ggplot2", "plotly", "RANN", "MASS", "uwot")
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> install.packages("DT", "shiny", "shinyFiles", "shinycssloaders", "shinydashboard", "shinyjs", "shinyWidgets", "shinybusy", "assertthat", "ggplot2", "plotly", "RANN", "MASS", "uwot")
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```
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```
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and from Bioconductor: EBImage and RBioFormats
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and from Bioconductor: EBImage and RBioFormats
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... | @@ -47,9 +47,13 @@ Download and install Docker then clone this repository. |
... | @@ -47,9 +47,13 @@ Download and install Docker then clone this repository. |
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From a terminal:
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From a terminal:
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- Navigate to the directory containing the Dockerfile
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- Navigate to the directory containing the Dockerfile
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- Build the container (be patient, this may take a while) with
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- Build the container (be patient, this may take a while) with
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```
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> sudo docker build --rm -t image-data-explorer .
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> sudo docker build --rm -t image-data-explorer .
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```
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- Run the app in the container with:
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- Run the app in the container with:
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```
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> sudo docker run --rm -p 5476:5476 -v /user/home/dir:/data image-data-explorer
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> sudo docker run --rm -p 5476:5476 -v /user/home/dir:/data image-data-explorer
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```
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Replace /user/home/dir with the path to your user's home directory or any other directory under which the image root directory resides. This is necessary to make the image root directory accessible to the app.
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Replace /user/home/dir with the path to your user's home directory or any other directory under which the image root directory resides. This is necessary to make the image root directory accessible to the app.
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The app can then be accessed from a web browser on the same machine at http://127.0.0.1:5476
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The app can then be accessed from a web browser on the same machine at http://127.0.0.1:5476
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... | | ... | |