... | @@ -16,7 +16,7 @@ OpenJDK 64-Bit Server VM (build 25.265-b01, mixed mode) |
... | @@ -16,7 +16,7 @@ OpenJDK 64-Bit Server VM (build 25.265-b01, mixed mode) |
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```
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```
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If the output is different, Java is probably not installed. Install it using the procedure appropriate for your system. For example, on Ubuntu and related Linux distributions:
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If the output is different, Java is probably not installed. Install it using the procedure appropriate for your system. For example, on Ubuntu and related Linux distributions:
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```
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```
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sudo apt-get install openjdk-8-jdk
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> sudo apt-get install openjdk-8-jdk
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```
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```
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After installing Java, the JDK needs to be registered with R. In a terminal, run:
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After installing Java, the JDK needs to be registered with R. In a terminal, run:
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... | @@ -46,7 +46,7 @@ Replace the value of 8 by the number of GB you want to allocate. |
... | @@ -46,7 +46,7 @@ Replace the value of 8 by the number of GB you want to allocate. |
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This package is the R interface to the Bioformats Java library and therefore depends on rJava. However, it also uses other packages such as fftwtools and tiff that depend on system libraries. Inspect any error message for clues as to which library might be missing. For example, if missing, libfftw and libtiff can be installed on Ubuntu-like systems with:
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This package is the R interface to the Bioformats Java library and therefore depends on rJava. However, it also uses other packages such as fftwtools and tiff that depend on system libraries. Inspect any error message for clues as to which library might be missing. For example, if missing, libfftw and libtiff can be installed on Ubuntu-like systems with:
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```
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```
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>sudo apt install libfftw3-dev libtiff5-dev
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> sudo apt install libfftw3-dev libtiff5-dev
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```
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```
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