picard 2221

recipes/analysissuites/picardtools/Singularity.picardtools-2221

-BootStrap: docker
-From: ubuntu:bionic
-
-%help
-
-	This singularity installs picard tools v 2.22.1
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-%post
-    # ~~~~~~ General setup and folder creation ~~~~~~ #
-    
-    apt-get update && apt-get install -y wget libreadline-dev
-        
-    export LC_ALL=C
-    export LC_CTYPE=C 
-    export LC_COLLATE=C 
-    export LC_TIME=C
-    export LC_MESSAGES=C
-    export LC_MONETARY=C
-    export LC_PAPER=C 
-    export LC_MEASUREMENT=C
-	
-    # ~~~~~ MINICONDA ~~~~~ #
-    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
-    bash Miniconda3-latest-Linux-x86_64.sh -b -p /conda && \
-    rm -f Miniconda3-latest-Linux-x86_64.sh
-    export PATH="/conda/bin:${PATH}"
-    
-    # ~~~~ R v 4.1.2 ~~~~~~ #
-    conda install -c conda-forge r-base=4.1.2
-    
-    # ~~~~~ PICARD TOOLS ~~~~~ #
-	conda install -y -c bioconda picard=2.22.1
-	
-	
-%environment
-    export PATH="${PATH}:/conda/bin"
-	export LC_ALL=C
-    export LC_CTYPE=C 
-    export LC_COLLATE=C 
-    export LC_TIME=C
-    export LC_MESSAGES=C
-    export LC_MONETARY=C
-    export LC_PAPER=C 
-    export LC_MEASUREMENT=C
-
-%labels
-	Author Nicolas Descostes
-	Version v0.0.1
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