Skip to content

GitLab

Open
Created by Christian Arnold@carnoldOwner

SNP integration: Feature and implementation details

Implemented due to Neha's suggestion, test feature and whether is functions flexibly enough.

Current implementation:

  1. Input: list of SNP positions and SNP genome assembly (rsid not enough) and GRN
  2. Overlap peaks with SNP positions and add (1) number of overlapping SNPs and (2) SNP annotation for each peak
  3. The returned modified GRN data frame then contains additional columns that can be used for filtering etc

Would it also be helpful to do the same with genes?

Edited by Christian Arnold