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There's a cyclical dependency. checkmate is loaded by checkAndLoadPackages....

Maksim Kholmatov requested to merge bugfix into master

There's a cyclical dependency. checkmate is loaded by checkAndLoadPackages. But when it's called in all.R it also calls checkAndLoadPackagesGenomeAssembly to get additional arguments. Problem is checkAndLoadPackagesGenomeAssembly requires checkmate =)

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