Issues · Zeller Group / GECCO · GitLab

Manually set `-Z` flag when running `hmmsearch`

#13 · created Mar 20, 2021 by Martin Larralde v2.0.0 enhancement long-term wontfix
- CLOSED
- 1
updated Mar 31, 2022
Add AntiSMASH-compatible output

#12 · created Aug 06, 2020 by Martin Larralde v2.0.0 enhancement implemented long-term
- CLOSED
- 1
updated Mar 31, 2022
Improve training data

#11 · created Jun 22, 2020 by Martin Larralde v2.0.0 enhancement implemented long-term
- CLOSED
- 1
updated Mar 31, 2022
Change handling of domains using OneHot encoding

#10 · created Mar 04, 2020 by Martin Larralde enhancement short-term wontfix
- CLOSED
- 1
updated Mar 31, 2022
Improve HMM annotation performance using thread pool

#9 · created Jan 29, 2020 by Martin Larralde enhancement implemented long-term performance
- CLOSED
- 2
updated Mar 31, 2022
Run BGC analysis on available MAGs 4 of 4 tasks completed

#8 · created Jan 27, 2020 by Martin Larralde analysis implemented
- CLOSED
- 0
updated Mar 31, 2022
Add compound prediction based on ChEBI class appartenance

#7 · created Jan 27, 2020 by Martin Larralde enhancement long-term
- 1
updated Mar 04, 2020
Setup CI and CD

#6 · created Jan 20, 2020 by Martin Larralde devops enhancement implemented
- CLOSED
- 1
- 0
updated Jan 23, 2020
Improve management of required database(s)

#5 · created Jan 20, 2020 by Martin Larralde enhancement implemented
- CLOSED
- 1
- 0
updated Jan 23, 2020
Use scipy functions where applicable 1 of 1 task completed

#4 · created Jan 20, 2020 by Martin Larralde enhancement implemented
- CLOSED
- 0
updated Jan 23, 2020
Use the `csv` module to write CSV files instead of raw IO

#3 · created Jan 20, 2020 by Martin Larralde code-quality implemented
- CLOSED
- 0
updated Jan 23, 2020
Improve CLI interace and embed scripts into a generic command

#2 · created Jan 20, 2020 by Martin Larralde enhancement implemented
- CLOSED
- 3
updated Jun 22, 2020
Reorganise code to be able to do a proper release to PyPI

#1 · created Jan 20, 2020 by Martin Larralde code-quality devops implemented
- CLOSED
- 1
- 0
updated Jan 23, 2020