Tools to design primers optimised for mutliplex PCRs and RT reactions.

Liposome microarray (LiMA) analysis suite

Source code for "Genome-wide quantification of differential transcription factor activity: diffTF"

R package for group-adaptive penalized regression

Clean repository for the working version of SIAMCAT.

Local sharpening of cryo-EM density maps

Analysis and data for "At the limits of Peer Review for Talent Identification: an analysis of the EMBO Postdoctoral Fellowships Selection Process", by D. del Àlamo and B. Klaus

Setup a default laravel project

Collaboration between Saez-Rodriguez and Zaugg labs.

Synchronises the content of a directory on the server with a galaxy library's folder. The server dir sub-structure is preserved and all files linked using symbolic links. The script can be started in daemon mode or placed under cron monitoring.

galaxy tool to shift read position in a BAM file. Pretty handy for ATAC-seq. The shell script can also be used directly. Resulting BAM is sorted.