Explore projects

Server to implement image analysis jobs for online use (e.g. in feedback microscopy), including adapters to ilastik and TensorFlow.

SPACE-FISH,Decoding,Segmentation,SpatialOmics,RS-FISH,SpotDetection

Laura Bianchi - Ruprecht lab (CRG)

Gopi Shah - MIF

Nicola Gritti - MIF

Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish

A scalable and reproducible Snakemake workflow for preprocessing SUM-seq data

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

The back-end API.

Rust coder/decoder for Nucleotide Archive Format (NAF) files.

SVLT = Serving Vision to Living Things. A service for on-demand computer vision, targeted at image feedback in microscopy and other life sciences applications.

The Bretzel app's front-end code.

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

Cython bindings and Python interface to HMMER3.