CRF / Refiner refactor
Added
- Unit tests for
gecco.orf, gecco.bgc, gecco.crf.preprocessing modules, and the gecco run command.
- Missing documentation to all
gecco public members.
Changed
-
ProdigalFinder and HMMER now work with SeqRecord instead of raw files, to avoid format conversion issues.
- Simplify code in
ClusterCRF.
- Make some parts of the API work with iterables instead of lists where possible.
Fixed
- LOTO cross-validation not working properly on rows with multiple class labels.
Removed
-
demandimport hack (causing issue with some sklearn inherited classes).
