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Zeller Group
GECCO
Merge requests
Open
0
Merged
19
Closed
0
All
19
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Title
Priority
Created date
Updated date
Milestone due date
Popularity
Label priority
Merged date
Closed date
Title
Add code support for multiple HMMs and fix issue with `gecco train`
!5
· created
Mar 05, 2020
by
Martin Larralde
bug
enhancement
fixed
implemented
MERGED
0
updated
Mar 30, 2020
Add feature selection using Fisher Exact Test
!11
· created
May 04, 2020
by
Martin Larralde
enhancement
MERGED
0
updated
May 04, 2020
Change internal data layer and output clusters as GenBank files
!14
· created
Jul 16, 2020
by
Martin Larralde
MERGED
0
updated
Jul 17, 2020
Code refactor and improvements of the distribution system
!1
· created
Jan 23, 2020
by
Martin Larralde
code-quality
enhancement
implemented
MERGED
0
updated
Mar 30, 2020
Code refactor and new CLI for training GECCO
!2
· created
Feb 24, 2020
by
Martin Larralde
code-quality
enhancement
implemented
MERGED
0
updated
Mar 30, 2020
CRF / Refiner refactor
!10
· created
Apr 29, 2020
by
Martin Larralde
bug
code-quality
MERGED
0
updated
Apr 29, 2020
Fix coordinate extraction in `HMMER`
!3
· created
Feb 28, 2020
by
Martin Larralde
bug
fixed
MERGED
0
updated
Mar 30, 2020
Fix extraction of sequence IDs and add columns to cluster table
!4
· created
Mar 05, 2020
by
Martin Larralde
bug
fixed
MERGED
0
updated
Mar 30, 2020
Fix FET feature selection causing some data to be erased from marginals prediction
!12
· created
May 14, 2020
by
Martin Larralde
bug
fixed
short-term
MERGED
0
updated
May 14, 2020
FIx issue with generated cluster prediction table
!6
· created
Mar 10, 2020
by
Martin Larralde
bug
fixed
MERGED
0
updated
Mar 10, 2020
Refactor
!8
· created
Mar 30, 2020
by
Martin Larralde
code-quality
enhancement
short-term
MERGED
0
updated
Apr 08, 2020
Refactor CRF code and cross-validation interface
!9
· created
Apr 20, 2020
by
Martin Larralde
bug
code-quality
enhancement
performance
MERGED
0
updated
Apr 20, 2020
Refactor HMM handling
!7
· created
Mar 25, 2020
by
Martin Larralde
code-quality
enhancement
implemented
MERGED
0
updated
Mar 30, 2020
Replace HMMER3 with PyHMMER for domain annotation.
!17
· created
Jan 11, 2021
by
Martin Larralde
v0.5.0
enhancement
MERGED
Approved
0
updated
Jan 11, 2021
Replace Nearest-Neighbour classifier with Random Forest for BGC type prediction
!15
· created
Aug 03, 2020
by
Martin Larralde
v0.3.0
enhancement
short-term
MERGED
0
updated
Aug 03, 2020
Rewrite CLI to be more user friendly using `rich`
!19
· created
Feb 28, 2021
by
Martin Larralde
code-quality
enhancement
short-term
MERGED
0
updated
Feb 28, 2021
Rewrite distribution files and update documentation and README
!18
· created
Jan 13, 2021
by
Martin Larralde
MERGED
0
updated
Jan 13, 2021
Setup project to download assets from GitHub releases when building wheel
!13
· created
Jul 13, 2020
by
Martin Larralde
MERGED
0
updated
Jul 13, 2020
Stop using `pandas` as the internal data layer
!16
· created
Aug 06, 2020
by
Martin Larralde
v0.4.0
code-quality
enhancement
MERGED
0
updated
Aug 06, 2020
