Use getter's and setter's for accessing slots in your class
- use phyloseq accessors and assignment functions
rebuild SIAMCAT object
This need to be done, otherwise we need accessors for each slot in each slot...
- change data_split -> list
- change label -> list
change phyloseq slot name to physeq
In order to avoid mother of all name conflicts.
-
siamcat@phyloseq=>siamcat@physeq -
phyloseq<-=>physeq<- -
phyloseq()=>physeq()
create assigment functions
-
phyloseq<- -
label<- -
model_list<- -
eval_data<- -
norm_param<- -
data_split<- -
pred_matrix<- -
orig_feat<-
correct accessors
- generic slot accessor
-
phyloseq() -
otu_table() -
label() -
model_list() -
eval_data() -
norm_param() -
data_split() -
pred_matrix() -
orig_feat() - remove old ones when replaced
eliminate @
- correct accessors
- use assigments in the returns of the functions
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