Docs for internal functions
Summary
We need to add docs for some of the internal functions.
We just need to be sure, but I think just #' @keywords internal
should be enough. In that case some of those are safe already.
Goals/sub-features
In check_associations.r
:
-
associations.bean.plot -
associations.box.plot -
associations.quantile.box.plot -
associations.quantile.rect.plot -
associations.margins.plot -
associations.aucs.plot -
associations.fcs.plot -
associations.pr.shift.plot -
associations.pvals.plot -
is.color -
check.color.scheme -
associations.labels.plot -
analyse.binary.marker -
change.transparency -
quantiles.plot -
create.tints -
quantile.rect.plot -
quantile.median.plot
In evaluate_predictions.r
:
-
evaluate.classifier -
evaluate.area.trapez -
evaluate.get.pr -
evaluate.calc.aupr
In model_interpretation_plot.R
:
-
plot.feature.weights -
plot.pred.and.meta -
plot.proportion.of.weights -
plot.percentage.of.features -
plot.heatmap -
prepare.heatmap.fc -
prepare.heatmap.zscore -
select.features -
get.weights.matrix
In plm_utils.R
:
-
train.plm -
get.optimal.lambda.for.glmnet -
get.parameters.from.param.set
In siamcat_class_constructor.r
:
-
get.component.classes -
is.component.class
In train_model.r
:
-
measureAUPRC
Edited by Konrad Zych