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##### For Windows (version 10 and above)
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Note: The IDE is not tested on Windows. These instructions are provided on a best effort basis.
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1. Install Java (administrative privileges required):
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1. Install Java (administrative privileges may be required):
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- Go to https://java.com/en/download/manual.jsp and select the 'Windows Offline (64-bit)' installer
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- After downloading, run the installer using the default options.
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2. Go to https://cran.r-project.org/, select 'Download R for Windows' then 'base' then click the link 'Download R-x.x.x for Windows' (where R-x.x.x is R-4.2.1 as of this writing).
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2. Install R:
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- Go to https://cran.r-project.org/, select 'Download R for Windows' then 'base' then click the link 'Download R-x.x.x for Windows' (where R-x.x.x is R-4.2.1 as of this writing).
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- After downloading, run the installer using the default options.
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3. Install RTools which contains the resources to build R packages for Windows:
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- Go to https://cran.r-project.org/, click on 'Download R for Windows', then 'Rtools', and select the latest version of RTools (RTools 4.2 as of this writing).
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### R packages
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The IDE requires some R packages and will try to install them if it can't detect them on the system. In case of problems, it may be better to install the required packages manually.
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The IDE requires some R packages and will try to install them if it can't detect them on the system. In case of problems, it may be better to install the required packages manually. Note that package installation can take several minutes depending on how many dependencies are already present on the system.
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The IDE requires the following packages from CRAN: devtools, data.table, DT, shiny, shinyFiles, shinycssloaders, shinydashboard, shinyjs, shinyWidgets, shinybusy, assertthat, ggplot2, plotly, RANN, MASS, dbscan, uwot, xgboost, Ckmeans.1d.dp, e1071, caret, RColorBrewer, aws.s3.
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From within an R console, install with:
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... | ... | @@ -90,7 +90,13 @@ The app is then accessible from a web browser (on the same machine the app was s |
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2- Download the project's directory as a zip archive ([latest version](https://git.embl.de/heriche/image-data-explorer/-/archive/master/image-data-explorer-master.zip)) and unpack the archive.
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3- Start RStudio, navigate to the project's directory using RStudio's file browser and open the file image_data_explorer.R then click the 'Run App' button. The app is accessible from a web browser (on the same machine RStudio is running on) at http://127.0.0.1:5476
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3- Start RStudio then:
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- navigate to the project's directory using RStudio's file browser
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- open the file image_data_explorer.R.
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- if RStudio asks to install missing packages, reply yes. Note: this can take several minutes depending on how many of the package dependencies have already been installed.
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- click the 'Run App' button. The app may install remaining missing packages then will open the IDE interface in a browser window.
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The app is accessible from a web browser (on the same machine RStudio is running on) at http://127.0.0.1:5476
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## Building and running the app in a container
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