... | ... | @@ -27,7 +27,7 @@ This allows to select one column whose values will be used to set colours for th |
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If images are associated with the data file, select the image root directory. The image root directory is the top level directory relative to which the image file paths are given in the data table. The image root directory can be an S3-compatible object store. Then select one or two columns containing the paths to the images relative to the selected root directory. If a column name contains the pattern 'image.*path', this column will be preselected in the image 1 field.
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* **ROIs**
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If the data table rows correspond to ROIs of associated images, select here the columns containing the coordinates of the ROIs anchor points.
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If the rows correspond to time points only (i.e. with no ROI definition), select only a column for frame coordinates and leave X and Y coordinates empty. If a column name contains the pattern 'coordinate_X|Y|Z|time', it will be preselected in the matching ROI coordinate field (e.g. a column named cell_coordinate_x will be preselected as column for coordinate X).
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If the rows correspond to time points or channels only (i.e. with no ROI definition), select only a column for frame coordinates and leave X and Y coordinates empty. If a column name contains the pattern 'coordinate_X|Y|Z|time', it will be preselected in the matching ROI coordinate field (e.g. a column named cell_coordinate_x will be preselected as column for coordinate X).
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* **High-throughput microscopy info**
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High-throughput microscopy is often carried out in multiwell plates and each row of the data table is associated with a plate and a well of that plate. This is where the columns containing plate and well information are selected. When images from multiple fields of views inside a well are available, these should be identified in a separate column selected under column for fields/positions.
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* **Save parameters**
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