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The two MRC maps produced (`pdb3j5p_4locscale.mrc` and `emd_5778_full_4locscale.mrc`) along with the mask (`emd_5778_mask_4locscale.mrc`) are to be used for input in the LocScale procedure.
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<hr>
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**NOTE**:
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**IMPORTANT**:
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CCTBX/CCP4 follow the ZXY map axis order convention, whereas most EM programs follow XYZ. This will mostly not have any consequences for visualization, but it may cause issues in further processing (i.e. result in inverted hand of the output maps).
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##### It is preferable to proceed in XYZ convention, please see [here](permute_axis_order).
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