... | @@ -10,12 +10,12 @@ In the following the procedure is illustrated for TRPV1 channel [2] from the EMD |
... | @@ -10,12 +10,12 @@ In the following the procedure is illustrated for TRPV1 channel [2] from the EMD |
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phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map -ma emd_5778_mask.map
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phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map -ma emd_5778_mask.map
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```
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```
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This procedure generates three files:
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This procedure generates four files:
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- `pdb3j5p_4locscale.pdb` __(shifted) PDB model with same P1 unit cell as EM map__
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- `pdb3j5p_4locscale.pdb` __(shifted) PDB model with same P1 unit cell as EM map__
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- `pdb3j5p_4locscale.mrc` __(shifted) reference model map__
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- `pdb3j5p_4locscale.mrc` __(shifted) reference model map__
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- `emd_5778_full_4locscale.mrc` __(shifted) original reconstruction__
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- `emd_5778_full_4locscale.mrc` __(shifted) original reconstruction__
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- `emd_5778_mask.mrc` __(shifted) mask__
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- `emd_5778_mask.mrc` __(shifted) mask__
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<br>
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<br>
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The two MRC maps produced (`pdb3j5p_4locscale.mrc` and `emd_5778_full_4locscale.mrc`) along with the mask (`emd_5778_mask_4locscale.mrc`) are to be used for input in the LocScale procedure.
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The two MRC maps produced (`pdb3j5p_4locscale.mrc` and `emd_5778_full_4locscale.mrc`) along with the mask (`emd_5778_mask_4locscale.mrc`) are to be used for input in the LocScale procedure.
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