example/config.json

example/input/test1.R1.txt.gz

example/input/test1.R2.txt.gz

example/input/test2.R1.txt.gz

example/input/test2.R2.txt.gz

example/output/0.Input/test1.R1.txt.gz

example/output/0.Input/test1.R2.txt.gz

example/output/0.Input/test2.R1.txt.gz

example/output/0.Input/test2.R2.txt.gz

example/output/1.FastQC_beforeTrimming/test1.R1_fastqc.html

example/output/1.FastQC_beforeTrimming/test1.R1_fastqc.zip

...t/1.FastQC_beforeTrimming/test1.R1_fastqc/Icons/error.png

...stQC_beforeTrimming/test1.R1_fastqc/Icons/fastqc_icon.png

...ut/1.FastQC_beforeTrimming/test1.R1_fastqc/Icons/tick.png

...1.FastQC_beforeTrimming/test1.R1_fastqc/Icons/warning.png

...beforeTrimming/test1.R1_fastqc/Images/adapter_content.png

...oreTrimming/test1.R1_fastqc/Images/duplication_levels.png

...C_beforeTrimming/test1.R1_fastqc/Images/kmer_profiles.png

...oreTrimming/test1.R1_fastqc/Images/per_base_n_content.png

...eforeTrimming/test1.R1_fastqc/Images/per_base_quality.png