Cleaning files

example/input/runSnakefile.sh

 #!/bin/bash
 
-# Cluster-specific settings, customized for the EMBL SLURM cluster.
-# Important: !! Modifications here are only needed if NEITHER conda NOR Singularity is used (see below) !!
-# !! Do not modify unless you know what you do!!
-# !! Ignore the lines with comments below unless you have a different setup, ask Christian for advice
-
-# Unload all modules and load the necessary ones for the pipeline
-# One exception might be R, which might have to be loaded depending on whether it is preloaded or not in the .profile or .bashrc
-# module purge
-# module load GCCcore ncurses BEDTools SAMtools R-bundle-Bioconductor/3.5-foss-2016b-R-3.4.0 Autoconf FastQC Trimmomatic snakemake MACS2 deepTools
-
 ########################
 # PATHS AND PARAMETERS #
 ########################
@@ -18,9 +8,7 @@
 . "./params.sh"
 
 
-
-
 ########################
 # RUN AUTOMATED SCRIPT #
 ########################
-. "/g/scb/zaugg/zaugg_shared/scripts/Christian/src/Snakemake/runSnakemakeWrapper.sh"
+. "../src/wrapper/runSnakemakeWrapper.sh"