example/config.json

example/input/samples.csv

example/input/test1_rep1_1.gz

example/input/test1_rep1_2.gz

example/input/test2_rep1_1.gz

example/input/test2_rep1_2.gz

example/output/0.Input/test1.R1.txt.gz

example/output/0.Input/test1.R2.txt.gz

example/output/0.Input/test1_rep1_1.gz

example/output/0.Input/test1_rep1_2.gz

example/output/0.Input/test2.R1.txt.gz

example/output/0.Input/test2.R2.txt.gz

example/output/0.Input/test2_rep1_1.gz

example/output/0.Input/test2_rep1_2.gz

example/output/1.FastQC_beforeTrimming/test1.R1_fastqc.html

....FastQC_beforeTrimming/test1.R1_fastqc/fastqc_report.html

...utput/1.FastQC_beforeTrimming/test1.R1_fastqc/summary.txt

example/output/1.FastQC_beforeTrimming/test1.R2_fastqc.html

....FastQC_beforeTrimming/test1.R2_fastqc/fastqc_report.html

...utput/1.FastQC_beforeTrimming/test1.R2_fastqc/summary.txt