General update
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- doc/Documentation.odt 0 additions, 0 deletionsdoc/Documentation.odt
- doc/Documentation.pdf 0 additions, 0 deletionsdoc/Documentation.pdf
- doc/misc/.~lock.Guidelines_ATAcseq_analysis.pptx# 1 addition, 0 deletionsdoc/misc/.~lock.Guidelines_ATAcseq_analysis.pptx#
- doc/misc/Alignment_issues_Bowtie2 20 additions, 0 deletionsdoc/misc/Alignment_issues_Bowtie2
- doc/misc/Buenrostro_2013_NatMeth_ATAC-seq.pdf 0 additions, 0 deletionsdoc/misc/Buenrostro_2013_NatMeth_ATAC-seq.pdf
- doc/misc/Guidelines_ATAcseq_analysis.pptx 0 additions, 0 deletionsdoc/misc/Guidelines_ATAcseq_analysis.pptx
- example/stable/input/config.yaml 1 addition, 1 deletionexample/stable/input/config.yaml
- example/templates/hg19/config.yaml 1 addition, 1 deletionexample/templates/hg19/config.yaml
- example/templates/hg38/config.yaml 2 additions, 2 deletionsexample/templates/hg38/config.yaml
- example/templates/mm10/config.yaml 1 addition, 1 deletionexample/templates/mm10/config.yaml
- example/templates/samples.csv 0 additions, 4 deletionsexample/templates/samples.csv
- example/templates/samples.tsv 4 additions, 0 deletionsexample/templates/samples.tsv
- src/Snakemake/R/aut_stats.R 3 additions, 3 deletionssrc/Snakemake/R/aut_stats.R
- src/Snakemake/R/consensusPeaks.R 22 additions, 1 deletionsrc/Snakemake/R/consensusPeaks.R
- src/Snakemake/R/functions.R 22 additions, 11 deletionssrc/Snakemake/R/functions.R
- src/Snakemake/Snakefile 47 additions, 35 deletionssrc/Snakemake/Snakefile
- src/Snakemake/dev/Snakefile 32 additions, 30 deletionssrc/Snakemake/dev/Snakefile
- src/Snakemake/multiqc_config.yaml 30 additions, 0 deletionssrc/Snakemake/multiqc_config.yaml
- src/Snakemake/tools/picard.jar 0 additions, 0 deletionssrc/Snakemake/tools/picard.jar
- src/Snakemake/tools/picard_2.22.8.jar 0 additions, 0 deletionssrc/Snakemake/tools/picard_2.22.8.jar
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