doc/Documentation.odt

doc/Documentation.pdf

doc/misc/.~lock.Guidelines_ATAcseq_analysis.pptx#

doc/misc/Alignment_issues_Bowtie2

doc/misc/Buenrostro_2013_NatMeth_ATAC-seq.pdf

doc/misc/Guidelines_ATAcseq_analysis.pptx

example/stable/input/config.yaml

example/templates/hg19/config.yaml

example/templates/hg38/config.yaml

example/templates/mm10/config.yaml

example/templates/samples.csv

example/templates/samples.tsv

src/Snakemake/R/aut_stats.R

src/Snakemake/R/consensusPeaks.R

src/Snakemake/R/functions.R

src/Snakemake/Snakefile

src/Snakemake/dev/Snakefile

src/Snakemake/multiqc_config.yaml

src/Snakemake/tools/picard.jar

src/Snakemake/tools/picard_2.22.8.jar