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Commit ec6fcff5 authored by Christian Arnold's avatar Christian Arnold
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Reversed change from yesterday, scripts section was accidentally removed

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......@@ -76,6 +76,7 @@ samples:
# STRING. "ATACseq" or "ChIPseq". Only data type specific steps are executed. Currently, if set to ChIP-Seq, ATAC-seq specific steps like RSS adjustment are not executed, and peak calling may include control samples if the sample table specifies this.
dataType: "ChIPseq"
dataType: "ATACseq"
###########################
# SECTION additionalInput #
......@@ -178,7 +179,7 @@ postalign:
#######################
# NOTE: There is usually no need to modify the parameters here.
scripts:
# INTEGER. Default 4000. The region size in bp that specifies what is considered within a TSS. The STATS script does a TSS enrichment test to test whether or not ATAC-Seq reads are primarily located within annotated TSS as opposed to outside of TSS regions. A value of 4000 means the region from -2kb up to +2kb of annotated TSS.
STATS_script_withinThr: 4000
......
......@@ -178,7 +178,7 @@ postalign:
#######################
# NOTE: There is usually no need to modify the parameters here.
scripts:
# INTEGER. Default 4000. The region size in bp that specifies what is considered within a TSS. The STATS script does a TSS enrichment test to test whether or not ATAC-Seq reads are primarily located within annotated TSS as opposed to outside of TSS regions. A value of 4000 means the region from -2kb up to +2kb of annotated TSS.
STATS_script_withinThr: 4000
......
......@@ -178,7 +178,7 @@ postalign:
#######################
# NOTE: There is usually no need to modify the parameters here.
scripts:
# INTEGER. Default 4000. The region size in bp that specifies what is considered within a TSS. The STATS script does a TSS enrichment test to test whether or not ATAC-Seq reads are primarily located within annotated TSS as opposed to outside of TSS regions. A value of 4000 means the region from -2kb up to +2kb of annotated TSS.
STATS_script_withinThr: 4000
......
......@@ -173,8 +173,9 @@ postalign:
# SECTION scripts #
#######################
# NOTE: There is usually no need to modify the parameters here.
# NOTE: There is usually no need to modify the parameters here.
scripts:
# INTEGER. Default 4000. The region size in bp that specifies what is considered within a TSS. The STATS script does a TSS enrichment test to test whether or not ATAC-Seq reads are primarily located within annotated TSS as opposed to outside of TSS regions. A value of 4000 means the region from -2kb up to +2kb of annotated TSS.
STATS_script_withinThr: 4000
......
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