This repository contains an ATAC-Seq pipeline using Snakemake. Folders and files should be self-explanatory, however, a few notes: 1) The doc folder contains various documentation. The "old" subfolder can be safely ignored. See the various PDF files for a (beta) version of the documentation and some other helpful information regarding how to run the pipeline, how to procvess ATAC-Seq data etc. 2) The example folder is important. Use this to test if you run the pipeline using a small example analysis consisting of two samples. 3) The src folder contains the source of the project.
Name | Last commit | Last update |
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doc | ||
example | ||
src/Snakemake | ||
.gitignore | ||
AtacSeq.Rproj | ||
LICENSE | ||
README |