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Paul Igor Costea
metaSNV
Commits
eef3fe39
Commit
eef3fe39
authored
Mar 05, 2018
by
Luis Pedro Coelho
Browse files
Fix htslib API usage
parent
f4b4a665
Changes
1
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Inline
Side-by-side
src/qaTools/qaCompute.cpp
View file @
eef3fe39
...
...
@@ -527,7 +527,7 @@ int main(int argc, char *argv[])
}
else
{
if
(
!
userOpt
.
spanCov
)
{
//All entries in SAM file are represented on the forward strand! (See specs of SAM format for details)
uint32_t
*
cigar
=
bam
1
_cigar
(
b
);
uint32_t
*
cigar
=
bam
_get
_cigar
(
b
);
uint32_t
pp
=
core
->
pos
+
1
;
int
i
=
0
;
if
(((
*
cigar
)
&
BAM_CIGAR_MASK
)
==
BAM_CSOFT_CLIP
||
((
*
cigar
)
&
BAM_CIGAR_MASK
)
==
BAM_CHARD_CLIP
)
{
//BWA is actively fucking with me.
...
...
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