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add modifications suggested by Lucas

Merged Alessio Milanese requested to merge milanese/metaSNV:master into master

Line 85 in metaSNV.py: Bugfix, add if clause to check header of bam file.

Line 31 of src/collapse_coverages.py: Sort strings instead of integers to make the code more general. Now keys can be string or number, when sorting strings we get the same result.

Edited by Alessio Milanese

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