@@ -24,10 +24,10 @@ This practical aims to familiarize you with the Galaxy user interface. It will t
**Tutorial**: [Introduction to Genomics and Galaxy](https://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-strands/tutorial.html).
**Differences with the tutorial:**
* In UCSC, select "table: Comprehensive (wgEncodeGencodeCompV24" instead of "table: known genes"
* In UCSC, select "table: Comprehensive (wgEncodeGencodeCompV24" instead of "table: known genes".
* When editing the name of the dataset, the button is not "Save attributes" but "Save".
* To split the sequences, search for the term "filter" instead of "split".
* To intersect the data, use "Intersect intervals" in the "Bedtools" section
* To intersect the data, use "Intersect intervals" in the "Bedtools" section.
## Manipulating your first genomic data
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@@ -36,6 +36,11 @@ In this section we will look at practical aspects of manipulation of next-genera
**Tutorial**:[Manipulating NGS data with Galaxy](https://galaxyproject.org/tutorials/ngs/).
**Difference with the tutorial:**
* Fastqc and Multiqc are in the section "NGS: Quality Control".
* To visualize the Multiqc report you need to download it.
* Trimmomatic is is "NGS: Read Processing -> READ/ADAPTER TRIMMING"
## What is ChIP-Seq?
**Slides**: [ChIP-seq data analysis](https://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/formation_of_super-structures_on_xi/slides.html#1)
