Newer
Older
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
BootStrap: docker
From: ubuntu:bionic
%help
This singularity installs picard tools v 2.27.1
%post
# ~~~~~~ General setup and folder creation ~~~~~~ #
apt-get update && apt-get install -y wget libreadline-dev
export LC_ALL=C
export LC_CTYPE=C
export LC_COLLATE=C
export LC_TIME=C
export LC_MESSAGES=C
export LC_MONETARY=C
export LC_PAPER=C
export LC_MEASUREMENT=C
# ~~~~~ MINICONDA ~~~~~ #
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /conda && \
rm -f Miniconda3-latest-Linux-x86_64.sh
export PATH="/conda/bin:${PATH}"
# ~~~~ R v 4.1.2 ~~~~~~ #
conda install -c conda-forge r-base=4.1.2
# ~~~~~ PICARD TOOLS ~~~~~ #
conda install -y -c bioconda picard=2.27.1
%environment
export PATH="${PATH}:/conda/bin"
export LC_ALL=C
export LC_CTYPE=C
export LC_COLLATE=C
export LC_TIME=C
export LC_MESSAGES=C
export LC_MONETARY=C
export LC_PAPER=C
export LC_MEASUREMENT=C
%labels
Author Nicolas Descostes
Version v0.0.1